1 Response_reg#1
137-254 aa · 118 aa · 45.6% of protein
Raw token
Response_reg:137:1.14e-27:254:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB71_RS00775
Response regulator, unclassified
Clostridium paraputrificum · GCF_001404795
ClassRRTypeunclassifiedLength259 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001404795#ARB71_RS00775Stable P2CS identifier used across views.
GenomeGCF_001404795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 259 aa (45.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:137:1.14e-27:254:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001404795::NZ_CYZW01000001.1::G00001
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span161541-165809Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852472_00160RefSeq proteinWP_055253261.1
Context group ID
GCF_001404795::NZ_CYZW01000001.1::G00001Context members
ARB71_RS00760ARB71_RS00765ARB71_RS00775
Partner locus tags
ARB71_RS00760ARB71_RS00765ARB71_RS00775
Partner old locus tags
ERS852472_00157ERS852472_00158ERS852472_00160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055253261.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB71_RS00775Primary locus identifier stored in the genes table.
Old locus tagERS852472_00160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZW01000001.1Sequence record reported by the local genomic context database.
Genomic interval165 030-165 809 nt780 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span161 541-165 809 ntGCF_001404795::NZ_CYZW01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404795::NZ_CYZW01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span161 541-165 809 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 541 nt165 809 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARB71_RS00760GCF_001404795#ARB71_RS00760
RRRpfG
161 541-162 572 nt · Forward (+)
ARB71_RS00765GCF_001404795#ARB71_RS00765
HKHybrid
162 556-164 643 nt · Forward (+)
ARB71_RS00775GCF_001404795#ARB71_RS00775
RRunclassifiedCurrent focus
165 030-165 809 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404795#ARB71_RS00775The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0657820
Simplified PFAM architecture for RROC_0657820
PFAM domain coverage: 117 / 259 aa (45.2%)
1 aa259 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[137-253]
- Domain count: 1
- Matched identifier: RROC_0657820
- Positioned domains: Response_reg 137-253 ; Response_reg 137-253
Cluster members and taxonomy
Representative gene: GCF_001404795#ARB71_RS00775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_001404795
Assembly13470_2#76 · Scaffoldhaploid
Genome composition3 597 627 bp · 29,5% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key