1 Response_reg#1
5-117 aa · 113 aa · 20.6% of protein
Raw token
Response_reg:5:8.35e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA24_RS14920
Response regulator, unclassified
Blautia wexlerae · GCF_001404755
ClassRRTypeunclassifiedLength548 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404755#ARA24_RS14920Stable P2CS identifier used across views.
GenomeGCF_001404755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 548 aa (33.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
456-493 aa · 38 aa · 6.9% of protein
Raw token
HTH_AraC:456:0.00000288:493:38:423 HTH_AraC#3
513-543 aa · 31 aa · 5.7% of protein
Raw token
HTH_AraC:513:0.0000000859:543:31:42- Raw architecture: Response_reg:5:8.35e-30:117:113:111#HTH_AraC:456:0.00000288:493:38:42#HTH_AraC:513:0.0000000859:543:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404755::NZ_CYZN01000024.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21823-24924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852478_03009RefSeq proteinWP_055201071.1
Context group ID
GCF_001404755::NZ_CYZN01000024.1::G00051Context members
ARA24_RS14920ARA24_RS14925
Partner locus tags
ARA24_RS14920ARA24_RS14925
Partner old locus tags
ERS852478_03009ERS852478_03010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055201071.1Primary protein accession used for annex mappings.
UniProt accessionA0A174FIM0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174FIM0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA24_RS14920Primary locus identifier stored in the genes table.
Old locus tagERS852478_03009Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZN01000024.1Sequence record reported by the local genomic context database.
Genomic interval21 823-23 469 nt1 647 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 823-24 924 ntGCF_001404755::NZ_CYZN01000024.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404755::NZ_CYZN01000024.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZN01000024.1All displayed genes belong to this local TCS context.
Neighborhood span21 823-24 924 nt3 102 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 823 nt24 924 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA24_RS14920GCF_001404755#ARA24_RS14920
RRunclassifiedCurrent focus
21 823-23 469 nt · Forward (+)
ARA24_RS14925GCF_001404755#ARA24_RS14925
HKClassic
23 473-24 924 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS14920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0076406
Simplified PFAM architecture for RROC_0076406
PFAM domain coverage: 319 / 548 aa (58.2%)
1 aa548 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-116] | GGDEF_2[163-291] | HTH_18[466-543]
- Domain count: 3
- Matched identifier: RROC_0076406
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GGDEF_2 163-291 ; GGDEF_2 163-291 ; HTH_18 466-543 ; HTH_18 466-543
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS14920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404755
Assembly13470_2#82 · Scaffoldhaploid
Genome composition4 111 435 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 54 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key