1 GGDEF#1
138-276 aa · 139 aa · 21.1% of protein
Raw token
GGDEF:138:3.43e-37:276:151:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA24_RS01125
Response regulator, RpfG family
Blautia wexlerae · GCF_001404755
ClassRRTypeRpfGLength659 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404755#ARA24_RS01125Stable P2CS identifier used across views.
GenomeGCF_001404755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length659 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage352 / 659 aa (53.4%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa659 aa
Domain-by-domain annotation3 items
2 Response_reg#2
304-415 aa · 112 aa · 17.0% of protein
Raw token
Response_reg:304:6.41e-30:415:113:1113 HD#3
496-596 aa · 101 aa · 15.3% of protein
Raw token
HD:496:0.00000000000627:596:101:110- Raw architecture: GGDEF:138:3.43e-37:276:151:160#Response_reg:304:6.41e-30:415:113:111#HD:496:0.00000000000627:596:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404755::NZ_CYZN01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span248951-250930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852478_00223RefSeq proteinWP_022381031.1
Context group ID
GCF_001404755::NZ_CYZN01000001.1::G00001Context members
ARA24_RS01125
Partner locus tags
ARA24_RS01125
Partner old locus tags
ERS852478_00223
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022381031.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X5K4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X5K4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA24_RS01125Primary locus identifier stored in the genes table.
Old locus tagERS852478_00223Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZN01000001.1Sequence record reported by the local genomic context database.
Genomic interval248 951-250 930 nt1 980 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span248 951-250 930 ntGCF_001404755::NZ_CYZN01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404755::NZ_CYZN01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span248 951-250 930 nt1 980 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 951 nt250 930 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA24_RS01125GCF_001404755#ARA24_RS01125
RRRpfGCurrent focus
248 951-250 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS01125The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034978
Simplified PFAM architecture for RROC_0034978
PFAM domain coverage: 389 / 659 aa (59.0%)
1 aa659 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[137-278] | Response_reg[304-415] | HD_5[481-615]
- Domain count: 3
- Matched identifier: RROC_0034978
- Positioned domains: GGDEF 137-278 ; GGDEF 137-278 ; Response_reg 304-415 ; Response_reg 304-415 ; HD_5 481-615 ; HD_5 481-615
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS01125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404755
Assembly13470_2#82 · Scaffoldhaploid
Genome composition4 111 435 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 54 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key