1 HAMP#1
188-254 aa · 67 aa · 13.6% of protein
Raw token
HAMP:188:0.0000000000833:254:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA24_RS03425
Histidine kinase, Classic
Blautia wexlerae · GCF_001404755
ClassHKTypeClassicLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404755#ARA24_RS03425Stable P2CS identifier used across views.
GenomeGCF_001404755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 493 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:285:6.37e-30:364:80:803 HATPase_c#3
383-490 aa · 108 aa · 21.9% of protein
Raw token
HATPase_c:383:0.00000000000019:490:108:109- Raw architecture: HAMP:188:0.0000000000833:254:67:69#His_kinase:285:6.37e-30:364:80:80#HATPase_c:383:0.00000000000019:490:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404755::NZ_CYZN01000004.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40397-43500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852478_00684RefSeq proteinWP_055059352.1
Context group ID
GCF_001404755::NZ_CYZN01000004.1::G00015Context members
ARA24_RS03420ARA24_RS03425
Partner locus tags
ARA24_RS03420ARA24_RS03425
Partner old locus tags
ERS852478_00683ERS852478_00684
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055059352.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QC96Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QC96_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA24_RS03425Primary locus identifier stored in the genes table.
Old locus tagERS852478_00684Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZN01000004.1Sequence record reported by the local genomic context database.
Genomic interval42 019-43 500 nt1 482 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 397-43 500 ntGCF_001404755::NZ_CYZN01000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404755::NZ_CYZN01000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span40 397-43 500 nt3 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 397 nt43 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA24_RS03420GCF_001404755#ARA24_RS03420
RRunclassified
40 397-41 992 nt · Reverse (-)
ARA24_RS03425GCF_001404755#ARA24_RS03425
HKClassicCurrent focus
42 019-43 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404755#ARA24_RS03425The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1515370
Simplified PFAM architecture for HKOC_1515370
PFAM domain coverage: 233 / 493 aa (47.3%)
1 aa493 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-254] | His_kinase[285-361] | HATPase_c[384-490]
- Domain count: 3
- Matched identifier: HKOC_1515370
- Positioned domains: HAMP 206-254 ; His_kinase 285-361 ; HATPase_c 384-490
Cluster members and taxonomy
Representative gene: GCF_001404755#ARA24_RS03425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_001404755
Assembly13470_2#82 · Scaffoldhaploid
Genome composition4 111 435 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 115 · HK 54 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key