1 HAMP#1
184-253 aa · 70 aa · 14.1% of protein
Raw token
HAMP:184:9.06e-16:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ990_RS04940
Histidine kinase, Classic
Dorea longicatena · GCF_001404635
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404635#AQ990_RS04940Stable P2CS identifier used across views.
GenomeGCF_001404635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 497 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-331 aa · 65 aa · 13.1% of protein
Raw token
HisKA:267:0.0000000000000025:331:65:643 HATPase_c#3
378-491 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:378:2.53e-31:491:114:109- Raw architecture: HAMP:184:9.06e-16:253:70:69#HisKA:267:0.0000000000000025:331:65:64#HATPase_c:378:2.53e-31:491:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404635::NZ_CYYM01000004.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144-2319Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852408_01008RefSeq proteinWP_055181346.1
Context group ID
GCF_001404635::NZ_CYYM01000004.1::G00012Context members
AQ990_RS04935AQ990_RS04940
Partner locus tags
AQ990_RS04935AQ990_RS04940
Partner old locus tags
ERS852408_01007ERS852408_01008
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055181346.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZFJ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZFJ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ990_RS04940Primary locus identifier stored in the genes table.
Old locus tagERS852408_01008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYM01000004.1Sequence record reported by the local genomic context database.
Genomic interval826-2 319 nt1 494 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span144-2 319 ntGCF_001404635::NZ_CYYM01000004.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404635::NZ_CYYM01000004.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYM01000004.1All displayed genes belong to this local TCS context.
Neighborhood span144-2 319 nt2 176 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 nt2 319 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ990_RS04935GCF_001404635#AQ990_RS04935
RROmpR
144-833 nt · Reverse (-)
AQ990_RS04940GCF_001404635#AQ990_RS04940
HKClassicCurrent focus
826-2 319 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404635#AQ990_RS04940The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1493421
Simplified PFAM architecture for HKOC_1493421
PFAM domain coverage: 229 / 497 aa (46.1%)
1 aa497 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-253] | HisKA[266-330] | HATPase_c[379-489]
- Domain count: 3
- Matched identifier: HKOC_1493421
- Positioned domains: HAMP 201-253 ; HisKA 266-330 ; HATPase_c 379-489
Cluster members and taxonomy
Representative gene: GCF_001404635#AQ990_RS04940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001404635
Assembly13414_6#35 · Scaffoldhaploid
Genome composition3 033 150 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key