1 dCache_1#1
37-230 aa · 194 aa · 33.6% of protein
Raw token
dCache_1:37:0.0000141:230:195:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ990_RS00465
Histidine kinase, Classic
Dorea longicatena · GCF_001404635
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404635#AQ990_RS00465Stable P2CS identifier used across views.
GenomeGCF_001404635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage449 / 577 aa (77.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-354 aa · 70 aa · 12.1% of protein
Raw token
HAMP:285:7.6e-16:354:70:693 His_kinase#3
369-446 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:369:1.86e-26:446:78:804 HATPase_c#4
465-571 aa · 107 aa · 18.5% of protein
Raw token
HATPase_c:465:0.00000000000894:571:111:109- Raw architecture: dCache_1:37:0.0000141:230:195:195#HAMP:285:7.6e-16:354:70:69#His_kinase:369:1.86e-26:446:78:80#HATPase_c:465:0.00000000000894:571:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404635::NZ_CYYM01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111096-114478Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852408_00094RefSeq proteinWP_055193365.1
Context group ID
GCF_001404635::NZ_CYYM01000001.1::G00002Context members
AQ990_RS00460AQ990_RS00465
Partner locus tags
AQ990_RS00460AQ990_RS00465
Partner old locus tags
ERS852408_00093ERS852408_00094
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055193365.1Primary protein accession used for annex mappings.
UniProt accessionA0A173W9H0Primary UniProt accession resolved in the annex database.
UniProt IDA0A173W9H0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ990_RS00465Primary locus identifier stored in the genes table.
Old locus tagERS852408_00094Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYM01000001.1Sequence record reported by the local genomic context database.
Genomic interval112 745-114 478 nt1 734 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span111 096-114 478 ntGCF_001404635::NZ_CYYM01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404635::NZ_CYYM01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span111 096-114 478 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 096 nt114 478 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ990_RS00460GCF_001404635#AQ990_RS00460
RRunclassified
111 096-112 748 nt · Reverse (-)
AQ990_RS00465GCF_001404635#AQ990_RS00465
HKClassicCurrent focus
112 745-114 478 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404635#AQ990_RS00465The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1177814
Simplified PFAM architecture for HKOC_1177814
PFAM domain coverage: 236 / 577 aa (40.9%)
1 aa577 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[303-354] | His_kinase[369-446] | HATPase_c[465-570]
- Domain count: 3
- Matched identifier: HKOC_1177814
- Positioned domains: HAMP 303-354 ; His_kinase 369-446 ; HATPase_c 465-570
Cluster members and taxonomy
Representative gene: GCF_001404635#AQ990_RS00465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001404635
Assembly13414_6#35 · Scaffoldhaploid
Genome composition3 033 150 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key