1 Response_reg#1
5-112 aa · 108 aa · 27.1% of protein
Raw token
Response_reg:5:6.38e-24:112:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS06080
Response regulator, CheB family
Lachnospira eligens · GCF_001404435
ClassRRTypeCheBLength399 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS06080Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length399 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage290 / 399 aa (72.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa399 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
211-392 aa · 182 aa · 45.6% of protein
Raw token
CheB_methylest:211:2.3e-81:392:182:177- Raw architecture: Response_reg:5:6.38e-24:112:108:111#CheB_methylest:211:2.3e-81:392:182:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20859-24171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_01251RefSeq proteinWP_022097332.1
Context group ID
GCF_001404435::NZ_CZBU01000003.1::G00022Context members
ARA42_RS06075ARA42_RS06080
Partner locus tags
ARA42_RS06075ARA42_RS06080
Partner old locus tags
ERS852490_01250ERS852490_01251
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022097332.1Primary protein accession used for annex mappings.
UniProt accessionA0A174Z4F7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174Z4F7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS06080Primary locus identifier stored in the genes table.
Old locus tagERS852490_01251Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000003.1Sequence record reported by the local genomic context database.
Genomic interval22 972-24 171 nt1 200 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 859-24 171 ntGCF_001404435::NZ_CZBU01000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span20 859-24 171 nt3 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 859 nt24 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS06075GCF_001404435#ARA42_RS06075
HKCheA
20 859-22 970 nt · Reverse (-)
ARA42_RS06080GCF_001404435#ARA42_RS06080
RRCheBCurrent focus
22 972-24 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS06080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0390256
Simplified PFAM architecture for RROC_0390256
PFAM domain coverage: 290 / 399 aa (72.7%)
1 aa399 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-112] | CheB_methylest[211-392]
- Domain count: 2
- Matched identifier: RROC_0390256
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; CheB_methylest 211-392 ; CheB_methylest 211-392
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS06080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key