1 HisKA#1
126-193 aa · 68 aa · 19.2% of protein
Raw token
HisKA:126:0.00000000000665:193:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS00560
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS00560Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 354 aa (51.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-349 aa · 113 aa · 31.9% of protein
Raw token
HATPase_c:237:3.89e-27:349:113:109- Raw architecture: HisKA:126:0.00000000000665:193:68:64#HATPase_c:237:3.89e-27:349:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109542-111297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00126RefSeq proteinWP_242865561.1
Context group ID
GCF_001404435::NZ_CZBU01000001.1::G00004Context members
ARA42_RS00555ARA42_RS00560
Partner locus tags
ARA42_RS00555ARA42_RS00560
Partner old locus tags
ERS852490_00125ERS852490_00126
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242865561.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YMM9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YMM9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS00560Primary locus identifier stored in the genes table.
Old locus tagERS852490_00126Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000001.1Sequence record reported by the local genomic context database.
Genomic interval110 233-111 297 nt1 065 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 542-111 297 ntGCF_001404435::NZ_CZBU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span109 542-111 297 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 542 nt111 297 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS00555GCF_001404435#ARA42_RS00555
RROmpR
109 542-110 240 nt · Reverse (-)
ARA42_RS00560GCF_001404435#ARA42_RS00560
HKClassicCurrent focus
110 233-111 297 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS00560The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2779748
Simplified PFAM architecture for HKOC_2779748
PFAM domain coverage: 286 / 354 aa (80.8%)
1 aa354 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[9-115] | HisKA[126-193] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2779748
- Positioned domains: DUF4118 9-115 ; HisKA 126-193 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS00560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key