1 HisKA#1
119-180 aa · 62 aa · 18.5% of protein
Raw token
HisKA:119:0.000000059:180:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS03410
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS03410Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 335 aa (50.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
225-331 aa · 107 aa · 31.9% of protein
Raw token
HATPase_c:225:6.33e-26:331:107:109- Raw architecture: HisKA:119:0.000000059:180:62:64#HATPase_c:225:6.33e-26:331:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000002.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51312-52992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00713RefSeq proteinWP_055214725.1
Context group ID
GCF_001404435::NZ_CZBU01000002.1::G00013Context members
ARA42_RS03405ARA42_RS03410
Partner locus tags
ARA42_RS03405ARA42_RS03410
Partner old locus tags
ERS852490_00712ERS852490_00713
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055214725.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BNK5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BNK5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS03410Primary locus identifier stored in the genes table.
Old locus tagERS852490_00713Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000002.1Sequence record reported by the local genomic context database.
Genomic interval51 985-52 992 nt1 008 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 312-52 992 ntGCF_001404435::NZ_CZBU01000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span51 312-52 992 nt1 681 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 312 nt52 992 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS03405GCF_001404435#ARA42_RS03405
RROmpR
51 312-51 983 nt · Forward (+)
ARA42_RS03410GCF_001404435#ARA42_RS03410
HKClassicCurrent focus
51 985-52 992 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS03410The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2848322
Simplified PFAM architecture for HKOC_2848322
PFAM domain coverage: 170 / 335 aa (50.7%)
1 aa335 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[118-180] | HATPase_c[225-331]
- Domain count: 2
- Matched identifier: HKOC_2848322
- Positioned domains: HisKA 118-180 ; HATPase_c 225-331
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS03410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key