1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:1.66e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB66_RS07195
Response regulator OmpR family
Coprococcus eutactus · GCF_001404315
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404315#ARB66_RS07195Stable P2CS identifier used across views.
GenomeGCF_001404315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.96e-30:227:77:77- Raw architecture: Response_reg:4:1.66e-31:113:111:111#Trans_reg_C:151:1.96e-30:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404315::NZ_CYYZ01000003.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82517-84899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852386_01461RefSeq proteinWP_022217373.1
Context group ID
GCF_001404315::NZ_CYYZ01000003.1::G00023Context members
ARB66_RS07195ARB66_RS07200
Partner locus tags
ARB66_RS07195ARB66_RS07200
Partner old locus tags
ERS852386_01461ERS852386_01462
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022217373.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K409Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K409_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB66_RS07195Primary locus identifier stored in the genes table.
Old locus tagERS852386_01461Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval82 517-83 206 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 517-84 899 ntGCF_001404315::NZ_CYYZ01000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404315::NZ_CYYZ01000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span82 517-84 899 nt2 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 517 nt84 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB66_RS07195GCF_001404315#ARB66_RS07195
RROmpRCurrent focus
82 517-83 206 nt · Reverse (-)
ARB66_RS07200GCF_001404315#ARB66_RS07200
HKClassic
83 199-84 899 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404315#ARB66_RS07195The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253430
Simplified PFAM architecture for RROC_1253430
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1253430
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_001404315#ARB66_RS07195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001404315
Assembly13414_6#13 · Scaffoldhaploid
Genome composition3 175 111 bp · 44,0% GCCoprococcus eutactus
Signal transduction countsGenes 82 · HK 42 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key