1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:9.31e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB66_RS00785
Response regulator OmpR family
Coprococcus eutactus · GCF_001404315
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404315#ARB66_RS00785Stable P2CS identifier used across views.
GenomeGCF_001404315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:150:3.84e-40:226:77:77- Raw architecture: Response_reg:4:9.31e-38:113:111:111#Trans_reg_C:150:3.84e-40:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404315::NZ_CYYZ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span167105-169268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852386_00161RefSeq proteinWP_015533197.1
Context group ID
GCF_001404315::NZ_CYYZ01000001.1::G00003Context members
ARB66_RS00785ARB66_RS00790
Partner locus tags
ARB66_RS00785ARB66_RS00790
Partner old locus tags
ERS852386_00161ERS852386_00162
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015533197.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K4T2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K4T2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB66_RS00785Primary locus identifier stored in the genes table.
Old locus tagERS852386_00161Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval167 105-167 791 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span167 105-169 268 ntGCF_001404315::NZ_CYYZ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404315::NZ_CYYZ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span167 105-169 268 nt2 164 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 105 nt169 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB66_RS00785GCF_001404315#ARB66_RS00785
RROmpRCurrent focus
167 105-167 791 nt · Forward (+)
ARB66_RS00790GCF_001404315#ARB66_RS00790
HKClassic
167 793-169 268 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS00765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302618
Simplified PFAM architecture for RROC_1302618
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1302618
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS00765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001404315
Assembly13414_6#13 · Scaffoldhaploid
Genome composition3 175 111 bp · 44,0% GCCoprococcus eutactus
Signal transduction countsGenes 82 · HK 42 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key