1 Response_reg#1
9-127 aa · 119 aa · 44.4% of protein
Raw token
Response_reg:9:6.96e-30:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1605_RS09450
Response regulator NarL family
Bifidobacterium breve MCC 1605 · GCF_001263935
ClassRRTypeNarLLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001263935#BBM1605_RS09450Stable P2CS identifier used across views.
GenomeGCF_001263935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 268 aa (66.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
205-262 aa · 58 aa · 21.6% of protein
Raw token
HTH_LUXR:205:2.45e-24:262:58:58- Raw architecture: Response_reg:9:6.96e-30:127:119:111#HTH_LUXR:205:2.45e-24:262:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001263935::NZ_AWFV01000028.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13045-16341Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1605_09860RefSeq proteinWP_052787703.1
Context group ID
GCF_001263935::NZ_AWFV01000028.1::G00010Context members
BBM1605_RS09445BBM1605_RS09450
Partner locus tags
BBM1605_RS09445BBM1605_RS09450
Partner old locus tags
BBM1605_09855BBM1605_09860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052787703.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4U0N0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4U0N0_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1605_RS09450Primary locus identifier stored in the genes table.
Old locus tagBBM1605_09860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWFV01000028.1Sequence record reported by the local genomic context database.
Genomic interval15 535-16 341 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 045-16 341 ntGCF_001263935::NZ_AWFV01000028.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263935::NZ_AWFV01000028.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWFV01000028.1All displayed genes belong to this local TCS context.
Neighborhood span13 045-16 341 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 045 nt16 341 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBM1605_RS09445GCF_001263935#BBM1605_RS09445
HKClassic
13 045-15 513 nt · Forward (+)
BBM1605_RS09450GCF_001263935#BBM1605_RS09450
RRNarLCurrent focus
15 535-16 341 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001263935#BBM1605_RS09450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619774
Simplified PFAM architecture for RROC_0619774
PFAM domain coverage: 174 / 268 aa (64.9%)
1 aa268 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[207-262]
- Domain count: 2
- Matched identifier: RROC_0619774
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 207-262 ; GerE 207-262
Cluster members and taxonomy
Representative gene: GCF_001263935#BBM1605_RS09450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 969 · GCF_001263935
AssemblyASM126393v1 · Scaffoldhaploid
Genome composition2 324 012 bp · 59,0% GCBifidobacterium breve MCC 1605
Signal transduction countsGenes 18 · HK 8 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key