1 Response_reg#1
11-124 aa · 114 aa · 50.2% of protein
Raw token
Response_reg:11:4.14e-16:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1605_RS04170
Response regulator NarL family
Bifidobacterium breve MCC 1605 · GCF_001263935
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001263935#BBM1605_RS04170Stable P2CS identifier used across views.
GenomeGCF_001263935Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 227 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-221 aa · 58 aa · 25.6% of protein
Raw token
HTH_LUXR:164:4.92e-26:221:58:58- Raw architecture: Response_reg:11:4.14e-16:124:114:111#HTH_LUXR:164:4.92e-26:221:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001263935::NZ_AWFV01000008.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span198067-198750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1605_04400RefSeq proteinWP_003832924.1
Context group ID
GCF_001263935::NZ_AWFV01000008.1::G00006Context members
BBM1605_RS04170
Partner locus tags
BBM1605_RS04170
Partner old locus tags
BBM1605_04400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003832924.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L0LQF5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L0LQF5_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1605_RS04170Primary locus identifier stored in the genes table.
Old locus tagBBM1605_04400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWFV01000008.1Sequence record reported by the local genomic context database.
Genomic interval198 067-198 750 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span198 067-198 750 ntGCF_001263935::NZ_AWFV01000008.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001263935::NZ_AWFV01000008.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWFV01000008.1All displayed genes belong to this local TCS context.
Neighborhood span198 067-198 750 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 067 nt198 750 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBM1605_RS04170GCF_001263935#BBM1605_RS04170
RRNarLCurrent focus
198 067-198 750 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000220135#BBR_RS18645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1355028
Simplified PFAM architecture for RROC_1355028
PFAM domain coverage: 169 / 227 aa (74.4%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[166-221]
- Domain count: 2
- Matched identifier: RROC_1355028
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 166-221 ; GerE 166-221
Cluster members and taxonomy
Representative gene: GCF_000220135#BBR_RS18645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 969 · GCF_001263935
AssemblyASM126393v1 · Scaffoldhaploid
Genome composition2 324 012 bp · 59,0% GCBifidobacterium breve MCC 1605
Signal transduction countsGenes 18 · HK 8 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key