1 HAMP#1
184-259 aa · 76 aa · 15.0% of protein
Raw token
HAMP:184:0.000000000301:259:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS01165
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771665#OU24_RS01165Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 506 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-329 aa · 67 aa · 13.2% of protein
Raw token
HisKA:263:0.00000000000581:329:67:643 HATPase_c#3
388-495 aa · 108 aa · 21.3% of protein
Raw token
HATPase_c:388:0.00000000000666:495:108:109- Raw architecture: HAMP:184:0.000000000301:259:76:69#HisKA:263:0.00000000000581:329:67:64#HATPase_c:388:0.00000000000666:495:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771665::NZ_JDUV01000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30027-32215Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000002.1::G00015Context members
OU24_RS01160OU24_RS01165
Partner locus tags
OU24_RS01160OU24_RS01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052118966.1Primary protein accession used for annex mappings.
UniProt accessionA0A086ZZG4Primary UniProt accession resolved in the annex database.
UniProt IDA0A086ZZG4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS01165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000002.1Sequence record reported by the local genomic context database.
Genomic interval30 695-32 215 nt1 521 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 027-32 215 ntGCF_000771665::NZ_JDUV01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span30 027-32 215 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 027 nt32 215 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU24_RS01160GCF_000771665#OU24_RS01160
RROmpR
30 027-30 698 nt · Forward (+)
OU24_RS01165GCF_000771665#OU24_RS01165
HKClassicCurrent focus
30 695-32 215 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS09905Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1444421
Simplified PFAM architecture for HKOC_1444421
PFAM domain coverage: 229 / 506 aa (45.3%)
1 aa506 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[203-259] | HisKA[264-329] | HATPase_c[389-494]
- Domain count: 3
- Matched identifier: HKOC_1444421
- Positioned domains: HAMP 203-259 ; HisKA 264-329 ; HATPase_c 389-494
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS09905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key