1 HisKA#1
112-173 aa · 62 aa · 18.8% of protein
Raw token
HisKA:112:0.00000000029:173:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS01020
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassHKTypeClassicLength330 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771665#OU24_RS01020Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length330 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 330 aa (52.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa330 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
220-329 aa · 110 aa · 33.3% of protein
Raw token
HATPase_c:220:1.59e-21:329:111:109- Raw architecture: HisKA:112:0.00000000029:173:62:64#HATPase_c:220:1.59e-21:329:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771665::NZ_JDUV01000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3546-5247Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000002.1::G00014Context members
OU24_RS01020OU24_RS01025
Partner locus tags
OU24_RS01020OU24_RS01025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_160268276.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS01020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000002.1Sequence record reported by the local genomic context database.
Genomic interval3 546-4 538 nt993 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 546-5 247 ntGCF_000771665::NZ_JDUV01000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span3 546-5 247 nt1 702 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 546 nt5 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU24_RS01020GCF_000771665#OU24_RS01020
HKClassicCurrent focus
3 546-4 538 nt · Reverse (-)
OU24_RS01025GCF_000771665#OU24_RS01025
RROmpR
4 549-5 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771665#OU24_RS01020The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2856862
Simplified PFAM architecture for HKOC_2856862
PFAM domain coverage: 171 / 330 aa (51.8%)
1 aa330 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[112-173] | HATPase_c[221-329]
- Domain count: 2
- Matched identifier: HKOC_2856862
- Positioned domains: HisKA 112-173 ; HATPase_c 221-329
Cluster members and taxonomy
Representative gene: GCF_000771665#OU24_RS01020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key