1 Response_reg#1
10-107 aa · 98 aa · 43.9% of protein
Raw token
Response_reg:10:0.00000000000371:107:98:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS01400
Response regulator NarL family
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000771665#OU24_RS01400Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 223 aa (69.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-215 aa · 56 aa · 25.1% of protein
Raw token
HTH_LUXR:160:3.01e-18:215:56:58- Raw architecture: Response_reg:10:0.00000000000371:107:98:111#HTH_LUXR:160:3.01e-18:215:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000771665::NZ_JDUV01000002.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81907-82578Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000002.1::G00016Context members
OU24_RS01400
Partner locus tags
OU24_RS01400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043164125.1Primary protein accession used for annex mappings.
UniProt accessionA0A086ZZB7Primary UniProt accession resolved in the annex database.
UniProt IDA0A086ZZB7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS01400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000002.1Sequence record reported by the local genomic context database.
Genomic interval81 907-82 578 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span81 907-82 578 ntGCF_000771665::NZ_JDUV01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span81 907-82 578 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 907 nt82 578 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OU24_RS01400GCF_000771665#OU24_RS01400
RRNarLCurrent focus
81 907-82 578 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS09670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591401
Simplified PFAM architecture for RROC_1591401
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-113] | GerE[161-215]
- Domain count: 2
- Matched identifier: RROC_1591401
- Positioned domains: Response_reg 10-113 ; Response_reg 10-113 ; GerE 161-215 ; GerE 161-215
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS09670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key