1 Response_reg#1
4-113 aa · 110 aa · 44.7% of protein
Raw token
Response_reg:4:1.62e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS00190
Response regulator OmpR family
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassRRTypeOmpRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771665#OU24_RS00190Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 246 aa (76.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 31.3% of protein
Raw token
Trans_reg_C:154:3.95e-29:230:77:77- Raw architecture: Response_reg:4:1.62e-30:113:111:111#Trans_reg_C:154:3.95e-29:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771665::NZ_JDUV01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41868-45493Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000001.1::G00001Context members
OU24_RS00185OU24_RS00190
Partner locus tags
OU24_RS00185OU24_RS00190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_162834845.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS00190Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000001.1Sequence record reported by the local genomic context database.
Genomic interval44 753-45 493 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 868-45 493 ntGCF_000771665::NZ_JDUV01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000001.1All displayed genes belong to this local TCS context.
Neighborhood span41 868-45 493 nt3 626 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 868 nt45 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU24_RS00185GCF_000771665#OU24_RS00185
HKClassic
41 868-44 756 nt · Forward (+)
OU24_RS00190GCF_000771665#OU24_RS00190
RROmpRCurrent focus
44 753-45 493 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771665#OU24_RS00190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0771049
Simplified PFAM architecture for RROC_0771049
PFAM domain coverage: 186 / 246 aa (75.6%)
1 aa246 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0771049
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000771665#OU24_RS00190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key