1 Response_reg#1
26-125 aa · 100 aa · 42.0% of protein
Raw token
Response_reg:26:0.00000000000182:125:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS11645
Response regulator NarL family
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassRRTypeNarLLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741695#BREU_RS11645Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 238 aa (63.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-227 aa · 52 aa · 21.8% of protein
Raw token
HTH_LUXR:176:2.65e-18:227:52:58- Raw architecture: Response_reg:26:0.00000000000182:125:100:111#HTH_LUXR:176:2.65e-18:227:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741695::NZ_JGZK01000010.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33142-33858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_1925RefSeq proteinWP_081886641.1
Context group ID
GCF_000741695::NZ_JGZK01000010.1::G00019Context members
BREU_RS11645
Partner locus tags
BREU_RS11645
Partner old locus tags
BREU_1925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081886641.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS11645Primary locus identifier stored in the genes table.
Old locus tagBREU_1925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000010.1Sequence record reported by the local genomic context database.
Genomic interval33 142-33 858 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 142-33 858 ntGCF_000741695::NZ_JGZK01000010.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000010.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000010.1All displayed genes belong to this local TCS context.
Neighborhood span33 142-33 858 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 142 nt33 858 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BREU_RS11645GCF_000741695#BREU_RS11645
RRNarLCurrent focus
33 142-33 858 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS11645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0935037
Simplified PFAM architecture for RROC_0935037
PFAM domain coverage: 162 / 238 aa (68.1%)
1 aa238 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[25-132] | GerE[175-228]
- Domain count: 2
- Matched identifier: RROC_0935037
- Positioned domains: Response_reg 25-132 ; Response_reg 25-132 ; GerE 175-228 ; GerE 175-228
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS11645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key