1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:9.39e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS03030
Response regulator OmpR family
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS03030Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-222 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:152:0.00000000000000297:222:75:77- Raw architecture: Response_reg:3:9.39e-30:113:111:111#Trans_reg_C:152:0.00000000000000297:222:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000003.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61628-63882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_0054RefSeq proteinWP_044088249.1
Context group ID
GCF_000741695::NZ_JGZK01000003.1::G00002Context members
BREU_RS03030BREU_RS03035
Partner locus tags
BREU_RS03030BREU_RS03035
Partner old locus tags
BREU_0054BREU_0055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044088249.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CUU0Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CUU0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS03030Primary locus identifier stored in the genes table.
Old locus tagBREU_0054Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000003.1Sequence record reported by the local genomic context database.
Genomic interval61 628-62 299 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 628-63 882 ntGCF_000741695::NZ_JGZK01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span61 628-63 882 nt2 255 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 628 nt63 882 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS03030GCF_000741695#BREU_RS03030
RROmpRCurrent focus
61 628-62 299 nt · Forward (+)
BREU_RS03035GCF_000741695#BREU_RS03035
HKClassic
62 296-63 882 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03030The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591407
Simplified PFAM architecture for RROC_1591407
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[152-222]
- Domain count: 2
- Matched identifier: RROC_1591407
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 152-222 ; Trans_reg_C 152-222
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key