1 KdpD#1
4-213 aa · 210 aa · 21.7% of protein
Raw token
KdpD:4:1.49e-126:213:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS03075
Histidine kinase, Classic
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassHKTypeClassicLength968 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS03075Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length968 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 968 aa (40.1%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa968 aa
Domain-by-domain annotation3 items
2 HisKA#2
622-689 aa · 68 aa · 7.0% of protein
Raw token
HisKA:622:0.0000000000254:689:68:643 HATPase_c#3
731-840 aa · 110 aa · 11.4% of protein
Raw token
HATPase_c:731:2.72e-24:840:110:109- Raw architecture: KdpD:4:1.49e-126:213:210:210#HisKA:622:0.0000000000254:689:68:64#HATPase_c:731:2.72e-24:840:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000003.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72487-76109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_0064RefSeq proteinWP_081886519.1
Context group ID
GCF_000741695::NZ_JGZK01000003.1::G00003Context members
BREU_RS03070BREU_RS03075
Partner locus tags
BREU_RS03070BREU_RS03075
Partner old locus tags
BREU_0063BREU_0064
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081886519.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CUU9Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CUU9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS03075Primary locus identifier stored in the genes table.
Old locus tagBREU_0064Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000003.1Sequence record reported by the local genomic context database.
Genomic interval73 203-76 109 nt2 907 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 487-76 109 ntGCF_000741695::NZ_JGZK01000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span72 487-76 109 nt3 623 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 487 nt76 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS03070GCF_000741695#BREU_RS03070
RROmpR
72 487-73 200 nt · Reverse (-)
BREU_RS03075GCF_000741695#BREU_RS03075
HKClassicCurrent focus
73 203-76 109 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03075The current gene is the representative for this cluster.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0313232
Simplified PFAM architecture for HKOC_0313232
PFAM domain coverage: 605 / 968 aa (62.5%)
1 aa968 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[5-213] | Usp[234-349] | DUF4118[386-490] | HisKA[623-689] | HATPase_c[732-839]
- Domain count: 5
- Matched identifier: HKOC_0313232
- Positioned domains: KdpD 5-213 ; Usp 234-349 ; DUF4118 386-490 ; HisKA 623-689 ; HATPase_c 732-839
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key