1 Response_reg#1
4-116 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:4:3.83e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS09155
Response regulator OmpR family
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741695#BREU_RS09155Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-231 aa · 74 aa · 31.9% of protein
Raw token
Trans_reg_C:158:0.000000000000495:231:78:77- Raw architecture: Response_reg:4:3.83e-34:116:113:111#Trans_reg_C:158:0.000000000000495:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741695::NZ_JGZK01000013.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span102677-103375Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_1880RefSeq proteinWP_044090339.1
Context group ID
GCF_000741695::NZ_JGZK01000013.1::G00021Context members
BREU_RS09155
Partner locus tags
BREU_RS09155
Partner old locus tags
BREU_1880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044090339.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CNZ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CNZ5_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS09155Primary locus identifier stored in the genes table.
Old locus tagBREU_1880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000013.1Sequence record reported by the local genomic context database.
Genomic interval102 677-103 375 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span102 677-103 375 ntGCF_000741695::NZ_JGZK01000013.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000013.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000013.1All displayed genes belong to this local TCS context.
Neighborhood span102 677-103 375 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 677 nt103 375 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BREU_RS09155GCF_000741695#BREU_RS09155
RROmpRCurrent focus
102 677-103 375 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS09155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1122867
Simplified PFAM architecture for RROC_1122867
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[158-231]
- Domain count: 2
- Matched identifier: RROC_1122867
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 158-231 ; Trans_reg_C 158-231
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS09155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key