1 HAMP#1
128-198 aa · 71 aa · 16.4% of protein
Raw token
HAMP:128:0.000000297:198:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS04825
Histidine kinase, Classic
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS04825Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 433 aa (55.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
203-267 aa · 65 aa · 15.0% of protein
Raw token
HisKA:203:0.00000000000462:267:65:643 HATPase_c#3
315-416 aa · 102 aa · 23.6% of protein
Raw token
HATPase_c:315:0.000000000000497:416:103:109- Raw architecture: HAMP:128:0.000000297:198:76:69#HisKA:203:0.00000000000462:267:65:64#HATPase_c:315:0.000000000000497:416:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000004.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104112-106072Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_1721RefSeq proteinWP_043164823.1
Context group ID
GCF_000741695::NZ_JGZK01000004.1::G00009Context members
BREU_RS04825BREU_RS04830
Partner locus tags
BREU_RS04825BREU_RS04830
Partner old locus tags
BREU_1721BREU_1722
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043164823.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CTQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CTQ6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS04825Primary locus identifier stored in the genes table.
Old locus tagBREU_1721Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000004.1Sequence record reported by the local genomic context database.
Genomic interval104 112-105 413 nt1 302 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 112-106 072 ntGCF_000741695::NZ_JGZK01000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000004.1All displayed genes belong to this local TCS context.
Neighborhood span104 112-106 072 nt1 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 112 nt106 072 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS04825GCF_000741695#BREU_RS04825
HKClassicCurrent focus
104 112-105 413 nt · Reverse (-)
BREU_RS04830GCF_000741695#BREU_RS04830
RROmpR
105 410-106 072 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS02755Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2140988
Simplified PFAM architecture for HKOC_2140988
PFAM domain coverage: 163 / 433 aa (37.6%)
1 aa433 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[203-266] | HATPase_c[317-415]
- Domain count: 2
- Matched identifier: HKOC_2140988
- Positioned domains: HisKA 203-266 ; HATPase_c 317-415
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS02755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key