1 Response_reg#1
9-127 aa · 119 aa · 47.2% of protein
Raw token
Response_reg:9:2e-29:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS03755
Response regulator NarL family
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassRRTypeNarLLength252 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS03755Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 252 aa (70.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
189-246 aa · 58 aa · 23.0% of protein
Raw token
HTH_LUXR:189:1.65e-24:246:58:58- Raw architecture: Response_reg:9:2e-29:127:119:111#HTH_LUXR:189:1.65e-24:246:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span255648-259071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_0207RefSeq proteinWP_044088404.1
Context group ID
GCF_000741695::NZ_JGZK01000003.1::G00005Context members
BREU_RS03750BREU_RS03755
Partner locus tags
BREU_RS03750BREU_RS03755
Partner old locus tags
BREU_0206BREU_0207
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044088404.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CV83Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CV83_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS03755Primary locus identifier stored in the genes table.
Old locus tagBREU_0207Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000003.1Sequence record reported by the local genomic context database.
Genomic interval258 313-259 071 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span255 648-259 071 ntGCF_000741695::NZ_JGZK01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span255 648-259 071 nt3 424 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 648 nt259 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS03750GCF_000741695#BREU_RS03750
HKClassic
255 648-258 113 nt · Forward (+)
BREU_RS03755GCF_000741695#BREU_RS03755
RRNarLCurrent focus
258 313-259 071 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0704277
Simplified PFAM architecture for RROC_0704277
PFAM domain coverage: 173 / 252 aa (68.7%)
1 aa252 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[192-246]
- Domain count: 2
- Matched identifier: RROC_0704277
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 192-246 ; GerE 192-246
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key