1 HisKA_3#1
209-267 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:209:1.62e-16:267:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS03750
Histidine kinase, Classic
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassHKTypeClassicLength821 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS03750Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length821 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 821 aa (18.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa821 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-408 aa · 93 aa · 11.3% of protein
Raw token
HATPase_c:316:0.00000000000014:408:109:109- Raw architecture: HisKA_3:209:1.62e-16:267:59:68#HATPase_c:316:0.00000000000014:408:109:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span255648-259071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_0206RefSeq proteinWP_162178915.1
Context group ID
GCF_000741695::NZ_JGZK01000003.1::G00005Context members
BREU_RS03750BREU_RS03755
Partner locus tags
BREU_RS03750BREU_RS03755
Partner old locus tags
BREU_0206BREU_0207
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_162178915.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS03750Primary locus identifier stored in the genes table.
Old locus tagBREU_0206Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000003.1Sequence record reported by the local genomic context database.
Genomic interval255 648-258 113 nt2 466 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span255 648-259 071 ntGCF_000741695::NZ_JGZK01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span255 648-259 071 nt3 424 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 648 nt259 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS03750GCF_000741695#BREU_RS03750
HKClassicCurrent focus
255 648-258 113 nt · Forward (+)
BREU_RS03755GCF_000741695#BREU_RS03755
RRNarL
258 313-259 071 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03750The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0528622
Simplified PFAM architecture for HKOC_0528622
PFAM domain coverage: 387 / 821 aa (47.1%)
1 aa821 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-101] | HisKA_3[209-271] | HATPase_c[316-407] | DUF7134[496-641]
- Domain count: 4
- Matched identifier: HKOC_0528622
- Positioned domains: DUF7134 16-101 ; HisKA_3 209-271 ; HATPase_c 316-407 ; DUF7134 496-641
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key