1 Response_reg#1
4-107 aa · 104 aa · 47.7% of protein
Raw token
Response_reg:4:6.52e-23:107:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS03690
Response regulator NarL family
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS03690Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 218 aa (73.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-212 aa · 57 aa · 26.1% of protein
Raw token
HTH_LUXR:156:8e-20:212:57:58- Raw architecture: Response_reg:4:6.52e-23:107:104:111#HTH_LUXR:156:8e-20:212:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span239285-241188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_0194RefSeq proteinWP_044088390.1
Context group ID
GCF_000741695::NZ_JGZK01000003.1::G00004Context members
BREU_RS03685BREU_RS03690
Partner locus tags
BREU_RS03685BREU_RS03690
Partner old locus tags
BREU_0193BREU_0194
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044088390.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CV70Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CV70_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS03690Primary locus identifier stored in the genes table.
Old locus tagBREU_0194Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000003.1Sequence record reported by the local genomic context database.
Genomic interval240 532-241 188 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span239 285-241 188 ntGCF_000741695::NZ_JGZK01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span239 285-241 188 nt1 904 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
239 285 nt241 188 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS03685GCF_000741695#BREU_RS03685
HKClassic
239 285-240 535 nt · Forward (+)
BREU_RS03690GCF_000741695#BREU_RS03690
RRNarLCurrent focus
240 532-241 188 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03690The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1814589
Simplified PFAM architecture for RROC_1814589
PFAM domain coverage: 159 / 218 aa (72.9%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-108] | GerE[158-211]
- Domain count: 2
- Matched identifier: RROC_1814589
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; GerE 158-211 ; GerE 158-211
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key