1 HisKA_3#1
204-267 aa · 64 aa · 15.1% of protein
Raw token
HisKA_3:204:9.8e-16:267:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BREU_RS03685
Histidine kinase, Classic
Bifidobacterium reuteri DSM 23975 · GCF_000741695
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741695#BREU_RS03685Stable P2CS identifier used across views.
GenomeGCF_000741695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 425 aa (38.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-413 aa · 100 aa · 23.5% of protein
Raw token
HATPase_c:314:0.00000000164:413:101:109- Raw architecture: HisKA_3:204:9.8e-16:267:64:68#HATPase_c:314:0.00000000164:413:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741695::NZ_JGZK01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span239285-241188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBREU_0193RefSeq proteinWP_414133017.1
Context group ID
GCF_000741695::NZ_JGZK01000003.1::G00004Context members
BREU_RS03685BREU_RS03690
Partner locus tags
BREU_RS03685BREU_RS03690
Partner old locus tags
BREU_0193BREU_0194
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_414133017.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBREU_RS03685Primary locus identifier stored in the genes table.
Old locus tagBREU_0193Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZK01000003.1Sequence record reported by the local genomic context database.
Genomic interval239 285-240 535 nt1 251 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span239 285-241 188 ntGCF_000741695::NZ_JGZK01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741695::NZ_JGZK01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span239 285-241 188 nt1 904 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
239 285 nt241 188 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BREU_RS03685GCF_000741695#BREU_RS03685
HKClassicCurrent focus
239 285-240 535 nt · Forward (+)
BREU_RS03690GCF_000741695#BREU_RS03690
RRNarL
240 532-241 188 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741695#BREU_RS03685The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2216568
Simplified PFAM architecture for HKOC_2216568
PFAM domain coverage: 66 / 425 aa (15.5%)
1 aa425 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[204-269]
- Domain count: 1
- Matched identifier: HKOC_2216568
- Positioned domains: HisKA_3 204-269
Cluster members and taxonomy
Representative gene: GCF_000741695#BREU_RS03685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 610 · GCF_000741695
AssemblyBifreu · Contighaploid
Genome composition2 847 572 bp · 60,5% GCBifidobacterium reuteri DSM 23975
Signal transduction countsGenes 39 · HK 15 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key