1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:7.38e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS04460
Response regulator OmpR family
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS04460Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:155:2.58e-33:231:77:77- Raw architecture: Response_reg:4:7.38e-38:113:111:111#Trans_reg_C:155:2.58e-33:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000006.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56847-59153Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_1244RefSeq proteinWP_043164620.1
Context group ID
GCF_000741175::NZ_JGYS01000006.1::G00018Context members
BCAL_RS04455BCAL_RS04460
Partner locus tags
BCAL_RS04455BCAL_RS04460
Partner old locus tags
BCAL_1243BCAL_1244
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043164620.1Primary protein accession used for annex mappings.
UniProt accessionA0A087A8X8Primary UniProt accession resolved in the annex database.
UniProt IDA0A087A8X8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS04460Primary locus identifier stored in the genes table.
Old locus tagBCAL_1244Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000006.1Sequence record reported by the local genomic context database.
Genomic interval58 443-59 153 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 847-59 153 ntGCF_000741175::NZ_JGYS01000006.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000006.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000006.1All displayed genes belong to this local TCS context.
Neighborhood span56 847-59 153 nt2 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 847 nt59 153 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS04455GCF_000741175#BCAL_RS04455
HKClassic
56 847-58 226 nt · Forward (+)
BCAL_RS04460GCF_000741175#BCAL_RS04460
RROmpRCurrent focus
58 443-59 153 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS04460The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0990668
Simplified PFAM architecture for RROC_0990668
PFAM domain coverage: 184 / 236 aa (78.0%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_0990668
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 157-230 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS04460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key