1 KdpD#1
4-213 aa · 210 aa · 21.8% of protein
Raw token
KdpD:4:7.77e-126:213:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS01210
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength962 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741175#BCAL_RS01210Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length962 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 962 aa (40.3%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa962 aa
Domain-by-domain annotation3 items
2 HisKA#2
629-696 aa · 68 aa · 7.1% of protein
Raw token
HisKA:629:0.000000000192:696:68:643 HATPase_c#3
738-847 aa · 110 aa · 11.4% of protein
Raw token
HATPase_c:738:2.93e-24:847:110:109- Raw architecture: KdpD:4:7.77e-126:213:210:210#HisKA:629:0.000000000192:696:68:64#HATPase_c:738:2.93e-24:847:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741175::NZ_JGYS01000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span243254-246142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0240RefSeq proteinWP_081887167.1
Context group ID
GCF_000741175::NZ_JGYS01000001.1::G00004Context members
BCAL_RS01210
Partner locus tags
BCAL_RS01210
Partner old locus tags
BCAL_0240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081887167.1Primary protein accession used for annex mappings.
UniProt accessionA0A087ACY5Primary UniProt accession resolved in the annex database.
UniProt IDA0A087ACY5_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS01210Primary locus identifier stored in the genes table.
Old locus tagBCAL_0240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000001.1Sequence record reported by the local genomic context database.
Genomic interval243 254-246 142 nt2 889 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span243 254-246 142 ntGCF_000741175::NZ_JGYS01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span243 254-246 142 nt2 889 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
243 254 nt246 142 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCAL_RS01210GCF_000741175#BCAL_RS01210
HKClassicCurrent focus
243 254-246 142 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS01210The current gene is the representative for this cluster.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0316511
Simplified PFAM architecture for HKOC_0316511
PFAM domain coverage: 605 / 962 aa (62.9%)
1 aa962 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[5-213] | Usp[234-349] | DUF4118[390-494] | HisKA[630-696] | HATPase_c[739-846]
- Domain count: 5
- Matched identifier: HKOC_0316511
- Positioned domains: KdpD 5-213 ; Usp 234-349 ; DUF4118 390-494 ; HisKA 630-696 ; HATPase_c 739-846
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS01210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key