1 HisKA_3#1
171-235 aa · 65 aa · 16.5% of protein
Raw token
HisKA_3:171:0.0000000000117:235:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS02870
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS02870Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 393 aa (36.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
301-379 aa · 79 aa · 20.1% of protein
Raw token
HATPase_c:301:0.0000503:379:85:109- Raw architecture: HisKA_3:171:0.0000000000117:235:65:68#HATPase_c:301:0.0000503:379:85:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span233265-235170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0576RefSeq proteinWP_223847978.1
Context group ID
GCF_000741175::NZ_JGYS01000003.1::G00010Context members
BCAL_RS02870BCAL_RS02875
Partner locus tags
BCAL_RS02870BCAL_RS02875
Partner old locus tags
BCAL_0576BCAL_0577
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_223847978.1Primary protein accession used for annex mappings.
UniProt accessionA0A7Y0HZE4Primary UniProt accession resolved in the annex database.
UniProt IDA0A7Y0HZE4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS02870Primary locus identifier stored in the genes table.
Old locus tagBCAL_0576Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000003.1Sequence record reported by the local genomic context database.
Genomic interval233 265-234 446 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span233 265-235 170 ntGCF_000741175::NZ_JGYS01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span233 265-235 170 nt1 906 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 265 nt235 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS02870GCF_000741175#BCAL_RS02870
HKClassicCurrent focus
233 265-234 446 nt · Forward (+)
BCAL_RS02875GCF_000741175#BCAL_RS02875
RRNarL
234 463-235 170 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698195#EM849_RS04040Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1965695
Simplified PFAM architecture for HKOC_1965695
PFAM domain coverage: 68 / 450 aa (15.1%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[228-295]
- Domain count: 1
- Matched identifier: HKOC_1965695
- Positioned domains: HisKA_3 228-295
Cluster members and taxonomy
Representative gene: GCF_008698195#EM849_RS04040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key