1 HisKA#1
10-75 aa · 66 aa · 28.4% of protein
Raw token
HisKA:10:0.00000000179:75:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EK3BL_RS09430
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis EK3 · GCF_000730125
ClassHKTypeClassicLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000730125#EK3BL_RS09430Stable P2CS identifier used across views.
GenomeGCF_000730125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 232 aa (73.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-224 aa · 104 aa · 44.8% of protein
Raw token
HATPase_c:121:4.03e-30:224:104:109- Raw architecture: HisKA:10:0.00000000179:75:66:64#HATPase_c:121:4.03e-30:224:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000730125::NZ_JNWB01000003.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span27979-28679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEK3BL_06135RefSeq proteinWP_032743555.1
Context group ID
GCF_000730125::NZ_JNWB01000003.1::G00002Context members
EK3BL_RS09430
Partner locus tags
EK3BL_RS09430
Partner old locus tags
EK3BL_06135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032743555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEK3BL_RS09430Primary locus identifier stored in the genes table.
Old locus tagEK3BL_06135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JNWB01000003.1Sequence record reported by the local genomic context database.
Genomic interval27 979-28 679 nt701 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 979-28 679 ntGCF_000730125::NZ_JNWB01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730125::NZ_JNWB01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JNWB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span27 979-28 679 nt701 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 979 nt28 679 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EK3BL_RS09430GCF_000730125#EK3BL_RS09430
HKClassicCurrent focus
27 979-28 679 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013204895#HNS28_RS11010Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2923167
Simplified PFAM architecture for HKOC_2923167
PFAM domain coverage: 170 / 239 aa (71.1%)
1 aa239 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[19-82] | HATPase_c[128-233]
- Domain count: 2
- Matched identifier: HKOC_2923167
- Positioned domains: HisKA 19-82 ; HATPase_c 128-233
Cluster members and taxonomy
Representative gene: GCF_013204895#HNS28_RS11010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 457 183 · GCF_000730125
AssemblyASM73012v1 · Scaffoldhaploid
Genome composition2 564 809 bp · 59,5% GCBifidobacterium longum subsp. infantis EK3
Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key