1 HisKA#1
17-82 aa · 66 aa · 27.6% of protein
Raw token
HisKA:17:0.00000000147:82:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HNS28_RS11010
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_013204895
ClassHKTypeClassicLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013204895#HNS28_RS11010Stable P2CS identifier used across views.
GenomeGCF_013204895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 239 aa (71.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
128-231 aa · 104 aa · 43.5% of protein
Raw token
HATPase_c:128:5.58e-30:231:104:109- Raw architecture: HisKA:17:0.00000000147:82:66:64#HATPase_c:128:5.58e-30:231:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013204895::NZ_JABNND010000034.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span27935-28654Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHNS28_11020RefSeq proteinWP_172664394.1
Context group ID
GCF_013204895::NZ_JABNND010000034.1::G00015Context members
HNS28_RS11010
Partner locus tags
HNS28_RS11010
Partner old locus tags
HNS28_11020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_172664394.1Primary protein accession used for annex mappings.
UniProt accessionA0A7Y5AM35Primary UniProt accession resolved in the annex database.
UniProt IDA0A7Y5AM35_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHNS28_RS11010Primary locus identifier stored in the genes table.
Old locus tagHNS28_11020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABNND010000034.1Sequence record reported by the local genomic context database.
Genomic interval27 935-28 654 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 935-28 654 ntGCF_013204895::NZ_JABNND010000034.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013204895::NZ_JABNND010000034.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABNND010000034.1All displayed genes belong to this local TCS context.
Neighborhood span27 935-28 654 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 935 nt28 654 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HNS28_RS11010GCF_013204895#HNS28_RS11010
HKClassicCurrent focus
27 935-28 654 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013204895#HNS28_RS11010The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2923167
Simplified PFAM architecture for HKOC_2923167
PFAM domain coverage: 170 / 239 aa (71.1%)
1 aa239 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[19-82] | HATPase_c[128-233]
- Domain count: 2
- Matched identifier: HKOC_2923167
- Positioned domains: HisKA 19-82 ; HATPase_c 128-233
Cluster members and taxonomy
Representative gene: GCF_013204895#HNS28_RS11010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_013204895
AssemblyASM1320489v1 · Contighaploid
Genome composition2 568 669 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key