1 Response_reg#1
7-80 aa · 74 aa · 28.2% of protein
Raw token
Response_reg:7:0.000000188:80:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EK3BL_RS01775
Response regulator OmpR family
Bifidobacterium longum subsp. infantis EK3 · GCF_000730125
ClassRRTypeOmpRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000730125#EK3BL_RS01775Stable P2CS identifier used across views.
GenomeGCF_000730125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 262 aa (54.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
193-261 aa · 69 aa · 26.3% of protein
Raw token
Trans_reg_C:193:0.0000132:261:74:77- Raw architecture: Response_reg:7:0.000000188:80:75:111#Trans_reg_C:193:0.0000132:261:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000730125::NZ_JNWB01000036.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22361-23149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEK3BL_07900RefSeq proteinWP_032745182.1
Context group ID
GCF_000730125::NZ_JNWB01000036.1::G00020Context members
EK3BL_RS01775
Partner locus tags
EK3BL_RS01775
Partner old locus tags
EK3BL_07900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032745182.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D5CBG4Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D5CBG4_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEK3BL_RS01775Primary locus identifier stored in the genes table.
Old locus tagEK3BL_07900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JNWB01000036.1Sequence record reported by the local genomic context database.
Genomic interval22 361-23 149 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 361-23 149 ntGCF_000730125::NZ_JNWB01000036.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730125::NZ_JNWB01000036.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JNWB01000036.1All displayed genes belong to this local TCS context.
Neighborhood span22 361-23 149 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 361 nt23 149 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EK3BL_RS01775GCF_000730125#EK3BL_RS01775
RROmpRCurrent focus
22 361-23 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS01775The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0644444
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS01775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 457 183 · GCF_000730125
AssemblyASM73012v1 · Scaffoldhaploid
Genome composition2 564 809 bp · 59,5% GCBifidobacterium longum subsp. infantis EK3
Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key