1 Response_reg#1
11-125 aa · 115 aa · 48.9% of protein
Raw token
Response_reg:11:1.69e-25:125:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EK3BL_RS08235
Response regulator NarL family
Bifidobacterium longum subsp. infantis EK3 · GCF_000730125
ClassRRTypeNarLLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000730125#EK3BL_RS08235Stable P2CS identifier used across views.
GenomeGCF_000730125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 235 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-219 aa · 56 aa · 23.8% of protein
Raw token
HTH_LUXR:164:8.97e-18:219:56:58- Raw architecture: Response_reg:11:1.69e-25:125:115:111#HTH_LUXR:164:8.97e-18:219:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000730125::NZ_JNWB01000007.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34931-36836Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEK3BL_11245RefSeq proteinWP_032743799.1
Context group ID
GCF_000730125::NZ_JNWB01000007.1::G00006Context members
EK3BL_RS08240EK3BL_RS08235
Partner locus tags
EK3BL_RS08240EK3BL_RS08235
Partner old locus tags
EK3BL_11240EK3BL_11245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032743799.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CTN1Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CTN1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEK3BL_RS08235Primary locus identifier stored in the genes table.
Old locus tagEK3BL_11245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JNWB01000007.1Sequence record reported by the local genomic context database.
Genomic interval36 129-36 836 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 931-36 836 ntGCF_000730125::NZ_JNWB01000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730125::NZ_JNWB01000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JNWB01000007.1All displayed genes belong to this local TCS context.
Neighborhood span34 931-36 836 nt1 906 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 931 nt36 836 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EK3BL_RS08240GCF_000730125#EK3BL_RS08240
HKClassic
34 931-36 112 nt · Forward (+)
EK3BL_RS08235GCF_000730125#EK3BL_RS08235
RRNarLCurrent focus
36 129-36 836 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS08235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1019097
Simplified PFAM architecture for RROC_1019097
PFAM domain coverage: 169 / 235 aa (71.9%)
1 aa235 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-125] | GerE[166-219]
- Domain count: 2
- Matched identifier: RROC_1019097
- Positioned domains: Response_reg 11-125 ; Response_reg 11-125 ; GerE 166-219 ; GerE 166-219
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS08235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 457 183 · GCF_000730125
AssemblyASM73012v1 · Scaffoldhaploid
Genome composition2 564 809 bp · 59,5% GCBifidobacterium longum subsp. infantis EK3
Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key