1 HisKA#1
192-257 aa · 66 aa · 14.3% of protein
Raw token
HisKA:192:0.000000000000733:257:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T534_RS0104990
Histidine kinase, Classic
Bifidobacterium ruminantium DSM 6489 · GCF_000687635
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000687635#T534_RS0104990Stable P2CS identifier used across views.
GenomeGCF_000687635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 461 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
323-435 aa · 113 aa · 24.5% of protein
Raw token
HATPase_c:323:8.91e-30:435:113:109- Raw architecture: HisKA:192:0.000000000000733:257:66:64#HATPase_c:323:8.91e-30:435:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000687635::NZ_JHWQ01000004.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span142184-144273Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000687635::NZ_JHWQ01000004.1::G00012Context members
T534_RS0104985T534_RS0104990
Partner locus tags
T534_RS0104985T534_RS0104990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026646544.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CW84Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CW84_BIFRUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT534_RS0104990Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JHWQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval142 888-144 273 nt1 386 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142 184-144 273 ntGCF_000687635::NZ_JHWQ01000004.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000687635::NZ_JHWQ01000004.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JHWQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span142 184-144 273 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 184 nt144 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T534_RS0104985GCF_000687635#T534_RS0104985
RROmpR
142 184-142 888 nt · Reverse (-)
T534_RS0104990GCF_000687635#T534_RS0104990
HKClassicCurrent focus
142 888-144 273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0104990The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1821050
Simplified PFAM architecture for HKOC_1821050
PFAM domain coverage: 177 / 461 aa (38.4%)
1 aa461 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-257] | HATPase_c[324-434]
- Domain count: 2
- Matched identifier: HKOC_1821050
- Positioned domains: HisKA 192-257 ; HATPase_c 324-434
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0104990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 410 647 · GCF_000687635
AssemblyASM68763v1 · Contighaploid
Genome composition2 218 565 bp · 59,0% GCBifidobacterium ruminantium DSM 6489
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key