1 HisKA_3#1
180-244 aa · 65 aa · 16.3% of protein
Raw token
HisKA_3:180:5.91e-16:244:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T534_RS0102550
Histidine kinase, Classic
Bifidobacterium ruminantium DSM 6489 · GCF_000687635
ClassHKTypeClassicLength399 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000687635#T534_RS0102550Stable P2CS identifier used across views.
GenomeGCF_000687635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length399 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 399 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa399 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
290-383 aa · 94 aa · 23.6% of protein
Raw token
HATPase_c:290:0.000000339:383:102:109- Raw architecture: HisKA_3:180:5.91e-16:244:65:68#HATPase_c:290:0.000000339:383:102:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000687635::NZ_JHWQ01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113443-115301Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000687635::NZ_JHWQ01000002.1::G00006Context members
T534_RS0102545T534_RS0102550
Partner locus tags
T534_RS0102545T534_RS0102550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026646135.1Primary protein accession used for annex mappings.
UniProt accessionA0A087D4L5Primary UniProt accession resolved in the annex database.
UniProt IDA0A087D4L5_BIFRUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT534_RS0102550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JHWQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval114 102-115 301 nt1 200 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 443-115 301 ntGCF_000687635::NZ_JHWQ01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000687635::NZ_JHWQ01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JHWQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span113 443-115 301 nt1 859 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 443 nt115 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T534_RS0102545GCF_000687635#T534_RS0102545
RRNarL
113 443-114 102 nt · Reverse (-)
T534_RS0102550GCF_000687635#T534_RS0102550
HKClassicCurrent focus
114 102-115 301 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0102550The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2452112
Simplified PFAM architecture for HKOC_2452112
PFAM domain coverage: 66 / 399 aa (16.5%)
1 aa399 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[180-245]
- Domain count: 1
- Matched identifier: HKOC_2452112
- Positioned domains: HisKA_3 180-245
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0102550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 410 647 · GCF_000687635
AssemblyASM68763v1 · Contighaploid
Genome composition2 218 565 bp · 59,0% GCBifidobacterium ruminantium DSM 6489
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key