1 Response_reg#1
16-123 aa · 108 aa · 44.4% of protein
Raw token
Response_reg:16:7.57e-37:123:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T534_RS0100640
Response regulator OmpR family
Bifidobacterium ruminantium DSM 6489 · GCF_000687635
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000687635#T534_RS0100640Stable P2CS identifier used across views.
GenomeGCF_000687635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 243 aa (74.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
165-236 aa · 72 aa · 29.6% of protein
Raw token
Trans_reg_C:165:2.29e-29:236:77:77- Raw architecture: Response_reg:16:7.57e-37:123:109:111#Trans_reg_C:165:2.29e-29:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000687635::NZ_JHWQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144201-146028Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000687635::NZ_JHWQ01000001.1::G00003Context members
T534_RS0100635T534_RS0100640
Partner locus tags
T534_RS0100635T534_RS0100640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026645809.1Primary protein accession used for annex mappings.
UniProt accessionA0A087D2B1Primary UniProt accession resolved in the annex database.
UniProt IDA0A087D2B1_BIFRUDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT534_RS0100640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JHWQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval145 297-146 028 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span144 201-146 028 ntGCF_000687635::NZ_JHWQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000687635::NZ_JHWQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JHWQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 201-146 028 nt1 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 201 nt146 028 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T534_RS0100635GCF_000687635#T534_RS0100635
HKClassic
144 201-145 277 nt · Reverse (-)
T534_RS0100640GCF_000687635#T534_RS0100640
RROmpRCurrent focus
145 297-146 028 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0100640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0826071
Simplified PFAM architecture for RROC_0826071
PFAM domain coverage: 180 / 243 aa (74.1%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[16-123] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0826071
- Positioned domains: Response_reg 16-123 ; Response_reg 16-123 ; Trans_reg_C 165-236 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0100640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 410 647 · GCF_000687635
AssemblyASM68763v1 · Contighaploid
Genome composition2 218 565 bp · 59,0% GCBifidobacterium ruminantium DSM 6489
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key