1 Response_reg#1
3-117 aa · 115 aa · 43.6% of protein
Raw token
Response_reg:3:6.93e-20:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T534_RS0104555
Response regulator LytTR family
Bifidobacterium ruminantium DSM 6489 · GCF_000687635
ClassRRTypeLytTRLength264 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000687635#T534_RS0104555Stable P2CS identifier used across views.
GenomeGCF_000687635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 264 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation2 items
2 LytTR#2
167-245 aa · 79 aa · 29.9% of protein
Raw token
LytTR:167:0.00000109:245:93:98- Raw architecture: Response_reg:3:6.93e-20:117:117:111#LytTR:167:0.00000109:245:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000687635::NZ_JHWQ01000004.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span64048-64842Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000687635::NZ_JHWQ01000004.1::G00011Context members
T534_RS0104555
Partner locus tags
T534_RS0104555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026646481.1Primary protein accession used for annex mappings.
UniProt accessionA0A087CWG5Primary UniProt accession resolved in the annex database.
UniProt IDA0A087CWG5_BIFRUDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT534_RS0104555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JHWQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval64 048-64 842 nt795 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 048-64 842 ntGCF_000687635::NZ_JHWQ01000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000687635::NZ_JHWQ01000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JHWQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span64 048-64 842 nt795 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 048 nt64 842 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
T534_RS0104555GCF_000687635#T534_RS0104555
RRLytTRCurrent focus
64 048-64 842 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0104555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0634718
Simplified PFAM architecture for RROC_0634718
PFAM domain coverage: 193 / 264 aa (73.1%)
1 aa264 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-120] | LytTR[171-245]
- Domain count: 2
- Matched identifier: RROC_0634718
- Positioned domains: Response_reg 3-120 ; Response_reg 3-120 ; LytTR 171-245 ; LytTR 171-245
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0104555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 410 647 · GCF_000687635
AssemblyASM68763v1 · Contighaploid
Genome composition2 218 565 bp · 59,0% GCBifidobacterium ruminantium DSM 6489
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key