1 HAMP#1
230-299 aa · 70 aa · 11.4% of protein
Raw token
HAMP:230:0.00000000000000777:299:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T534_RS0104150
Histidine kinase, Classic
Bifidobacterium ruminantium DSM 6489 · GCF_000687635
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000687635#T534_RS0104150Stable P2CS identifier used across views.
GenomeGCF_000687635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 615 aa (46.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
310-379 aa · 70 aa · 11.4% of protein
Raw token
HisKA:310:5.06e-16:379:70:643 HATPase_c#3
443-590 aa · 148 aa · 24.1% of protein
Raw token
HATPase_c:443:1.73e-20:590:148:109- Raw architecture: HAMP:230:0.00000000000000777:299:70:69#HisKA:310:5.06e-16:379:70:64#HATPase_c:443:1.73e-20:590:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000687635::NZ_JHWQ01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span188684-191272Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000687635::NZ_JHWQ01000003.1::G00009Context members
T534_RS0104145T534_RS0104150
Partner locus tags
T534_RS0104145T534_RS0104150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_245158010.1Primary protein accession used for annex mappings.
UniProt accessionA0A087D1M2Primary UniProt accession resolved in the annex database.
UniProt IDA0A087D1M2_BIFRUDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT534_RS0104150Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JHWQ01000003.1Sequence record reported by the local genomic context database.
Genomic interval189 425-191 272 nt1 848 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span188 684-191 272 ntGCF_000687635::NZ_JHWQ01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000687635::NZ_JHWQ01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JHWQ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span188 684-191 272 nt2 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
188 684 nt191 272 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T534_RS0104145GCF_000687635#T534_RS0104145
RROmpR
188 684-189 415 nt · Forward (+)
T534_RS0104150GCF_000687635#T534_RS0104150
HKClassicCurrent focus
189 425-191 272 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0104150The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0988916
Simplified PFAM architecture for HKOC_0988916
PFAM domain coverage: 266 / 615 aa (43.3%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[250-299] | HisKA[311-379] | HATPase_c[443-589]
- Domain count: 3
- Matched identifier: HKOC_0988916
- Positioned domains: HAMP 250-299 ; HisKA 311-379 ; HATPase_c 443-589
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0104150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 410 647 · GCF_000687635
AssemblyASM68763v1 · Contighaploid
Genome composition2 218 565 bp · 59,0% GCBifidobacterium ruminantium DSM 6489
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key