1 Response_reg#1
3-103 aa · 101 aa · 46.1% of protein
Raw token
Response_reg:3:7e-23:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T534_RS0102545
Response regulator NarL family
Bifidobacterium ruminantium DSM 6489 · GCF_000687635
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000687635#T534_RS0102545Stable P2CS identifier used across views.
GenomeGCF_000687635Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 219 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:1.04e-20:213:56:58- Raw architecture: Response_reg:3:7e-23:103:101:111#HTH_LUXR:158:1.04e-20:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000687635::NZ_JHWQ01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113443-115301Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000687635::NZ_JHWQ01000002.1::G00006Context members
T534_RS0102545T534_RS0102550
Partner locus tags
T534_RS0102545T534_RS0102550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026646134.1Primary protein accession used for annex mappings.
UniProt accessionA0A087D4L4Primary UniProt accession resolved in the annex database.
UniProt IDA0A087D4L4_BIFRUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT534_RS0102545Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JHWQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval113 443-114 102 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 443-115 301 ntGCF_000687635::NZ_JHWQ01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000687635::NZ_JHWQ01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JHWQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span113 443-115 301 nt1 859 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 443 nt115 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T534_RS0102545GCF_000687635#T534_RS0102545
RRNarLCurrent focus
113 443-114 102 nt · Reverse (-)
T534_RS0102550GCF_000687635#T534_RS0102550
HKClassic
114 102-115 301 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000687635#T534_RS0102545The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1769976
Simplified PFAM architecture for RROC_1769976
PFAM domain coverage: 156 / 219 aa (71.2%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1769976
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_000687635#T534_RS0102545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 410 647 · GCF_000687635
AssemblyASM68763v1 · Contighaploid
Genome composition2 218 565 bp · 59,0% GCBifidobacterium ruminantium DSM 6489
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key