1 HisKA#1
1-58 aa · 58 aa · 26.5% of protein
Raw token
HisKA:1:0.0000000000241:58:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C174_RS15930
Histidine kinase, Classic
Bacillus mycoides FSL H7-687 · GCF_000517985
ClassHKTypeClassicLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000517985#C174_RS15930Stable P2CS identifier used across views.
External referencesMIST4 C174_RS15930MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage118 / 219 aa (53.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
106-165 aa · 60 aa · 27.4% of protein
Raw token
HATPase_c:106:0.00000000000242:165:60:109- Raw architecture: HisKA:1:0.0000000000241:58:58:64#HATPase_c:106:0.00000000000242:165:60:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000517985::NZ_ASPY01000060.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span88325-88845Genomic interval covered by the local TCS group.
Context group ID
GCF_000517985::NZ_ASPY01000060.1::G00044Context members
C174_RS15930
Partner locus tags
C174_RS15930
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC174_RS15930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_ASPY01000060.1Sequence record reported by the local genomic context database.
Genomic interval88 325-88 845 nt521 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 325-88 845 ntGCF_000517985::NZ_ASPY01000060.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000517985::NZ_ASPY01000060.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ASPY01000060.1All displayed genes belong to this local TCS context.
Neighborhood span88 325-88 845 nt521 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 325 nt88 845 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C174_RS15930GCF_000517985#C174_RS15930
HKClassicCurrent focus
88 325-88 845 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS15930The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2928820
Simplified PFAM architecture for HKOC_2928820
PFAM domain coverage: 118 / 219 aa (53.9%)
1 aa219 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[2-57] | HATPase_c[105-166]
- Domain count: 2
- Matched identifier: HKOC_2928820
- Positioned domains: HisKA 2-57 ; HATPase_c 105-166
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS15930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 227 358 · GCF_000517985
AssemblyASM51798v1 · Contighaploid
Genome composition5 673 545 bp · 35,0% GCBacillus mycoides FSL H7-687
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key