1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:1.93e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C174_RS01985
Response regulator OmpR family
Bacillus mycoides FSL H7-687 · GCF_000517985
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000517985#C174_RS01985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 237 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.2% of protein
Raw token
Trans_reg_C:156:1.48e-31:229:74:77- Raw architecture: Response_reg:5:1.93e-40:114:111:111#Trans_reg_C:156:1.48e-31:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000517985::NZ_ASPY01000009.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14191-15980Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC174_02074RefSeq proteinWP_033728919.1
Context group ID
GCF_000517985::NZ_ASPY01000009.1::G00005Context members
C174_RS01980C174_RS01985
Partner locus tags
C174_RS01980C174_RS01985
Partner old locus tags
C174_02069C174_02074
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033728919.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC174_RS01985Primary locus identifier stored in the genes table.
Old locus tagC174_02074Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ASPY01000009.1Sequence record reported by the local genomic context database.
Genomic interval15 267-15 980 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 191-15 980 ntGCF_000517985::NZ_ASPY01000009.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000517985::NZ_ASPY01000009.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ASPY01000009.1All displayed genes belong to this local TCS context.
Neighborhood span14 191-15 980 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 191 nt15 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C174_RS01980GCF_000517985#C174_RS01980
HKClassic
14 191-15 270 nt · Reverse (-)
C174_RS01985GCF_000517985#C174_RS01985
RROmpRCurrent focus
15 267-15 980 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS01985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0963132
Simplified PFAM architecture for RROC_0963132
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0963132
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS01985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 227 358 · GCF_000517985
AssemblyASM51798v1 · Contighaploid
Genome composition5 673 545 bp · 35,0% GCBacillus mycoides FSL H7-687
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key