Gene detail

C174_RS00750

Histidine kinase, Classic

Bacillus mycoides FSL H7-687 · GCF_000517985

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength218 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_000517985#C174_RS00750Stable P2CS identifier used across views.

GenomeGCF_000517985Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_0554517Run 6 · 3 sequences · id 100% · cov 80%

External referencesWP_033728729.1 · MIST4 C174_RS00750RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length218 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage162 / 218 aa (74.3%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa218 aa

Domain-by-domain annotation2 items

1 HisKA#1

4-64 aa · 61 aa · 28.0% of protein

Raw tokenHisKA:4:0.00000000000143:64:61:64

2 HATPase_c#2

112-212 aa · 101 aa · 46.3% of protein

Raw tokenHATPase_c:112:1.2e-28:212:104:109

Raw architecture: HisKA:4:0.00000000000143:64:61:64#HATPase_c:112:1.2e-28:212:104:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_000517985::NZ_ASPY01000004.1::G00003

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span10845-11501Genomic interval covered by the local TCS group.

Identifiers

Old locus tagC174_00760RefSeq proteinWP_033728729.1

Context group IDGCF_000517985::NZ_ASPY01000004.1::G00003

Context members

C174_RS00750

Partner locus tags

C174_RS00750

Partner old locus tags

C174_00760

Partner protein IDs

WP_033728729.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_033728729.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagC174_RS00750Primary locus identifier stored in the genes table.

Old locus tagC174_00760Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_ASPY01000004.1Sequence record reported by the local genomic context database.

Genomic interval10 845-11 501 nt657 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span10 845-11 501 ntGCF_000517985::NZ_ASPY01000004.1::G00003

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000517985::NZ_ASPY01000004.1::G00003

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_ASPY01000004.1All displayed genes belong to this local TCS context.

Neighborhood span10 845-11 501 nt657 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

10 845 nt11 501 nt

+-C174_RS00750

Neighborhood gene cards

1 gene in the current local neighborhood.

C174_RS00750GCF_000517985#C174_RS00750

HKClassicCurrent focus

10 845-11 501 nt · Reverse (-)

Old locus C174_00760RefSeq WP_033728729.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0554517HK

Run 63 sequencesid 100%cov 80%

PFAM PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c

Representative GCF_002014505#BW899_RS23280

Selected clusterHKOC_0554517Run 6 · HK · 3 sequences

Representative sequenceGCF_002014505#BW899_RS23280Use this link to inspect the representative gene detail.

PFAM architecturePAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_0554517

Simplified PFAM architecture for HKOC_0554517

PFAM domain coverage: 448 / 801 aa (55.9%)

1 aa801 aa

PAS_4PAS_4PAS_9HisKAHATPase_c

Simplified architecture: PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
Raw architecture: PAS_4[230-310] | PAS_4[331-437] | PAS_9[473-569] | HisKA[587-646] | HATPase_c[694-796]
Domain count: 5
Matched identifier: HKOC_0554517
Positioned domains: PAS_4 230-310 ; PAS_4 331-437 ; PAS_9 473-569 ; HisKA 587-646 ; HATPase_c 694-796

Cluster members and taxonomy

Representative gene: GCF_002014505#BW899_RS23280

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 227 358 · GCF_000517985

AssemblyASM51798v1 · Contighaploid

Genome composition5 673 545 bp · 35,0% GCBacillus mycoides FSL H7-687

Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

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