1 Response_reg#1
3-103 aa · 101 aa · 45.9% of protein
Raw token
Response_reg:3:9.19e-23:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1494_RS06795
Response regulator NarL family
Bifidobacterium sp. MSTE12 · GCF_000513015
ClassRRTypeNarLLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000513015#HMPREF1494_RS06795Stable P2CS identifier used across views.
GenomeGCF_000513015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 220 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 25.5% of protein
Raw token
HTH_LUXR:159:2.61e-20:214:56:58- Raw architecture: Response_reg:3:9.19e-23:103:101:111#HTH_LUXR:159:2.61e-20:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000513015::NZ_AZYA01000034.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34820-36648Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1494_0462RefSeq proteinWP_034521329.1
Context group ID
GCF_000513015::NZ_AZYA01000034.1::G00016Context members
HMPREF1494_RS06790HMPREF1494_RS06795
Partner locus tags
HMPREF1494_RS06790HMPREF1494_RS06795
Partner old locus tags
HMPREF1494_0460HMPREF1494_0462
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034521329.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2SZM9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2SZM9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1494_RS06795Primary locus identifier stored in the genes table.
Old locus tagHMPREF1494_0462Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AZYA01000034.1Sequence record reported by the local genomic context database.
Genomic interval35 986-36 648 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 820-36 648 ntGCF_000513015::NZ_AZYA01000034.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000513015::NZ_AZYA01000034.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AZYA01000034.1All displayed genes belong to this local TCS context.
Neighborhood span34 820-36 648 nt1 829 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 820 nt36 648 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1494_RS06790GCF_000513015#HMPREF1494_RS06790
HKClassic
34 820-35 989 nt · Forward (+)
HMPREF1494_RS06795GCF_000513015#HMPREF1494_RS06795
RRNarLCurrent focus
35 986-36 648 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513015#HMPREF1494_RS06795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1724931
Simplified PFAM architecture for RROC_1724931
PFAM domain coverage: 156 / 220 aa (70.9%)
1 aa220 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[161-214]
- Domain count: 2
- Matched identifier: RROC_1724931
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 161-214 ; GerE 161-214
Cluster members and taxonomy
Representative gene: GCF_000513015#HMPREF1494_RS06795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 409 · GCF_000513015
AssemblyBspMSTE12v1.0 · Contighaploid
Genome composition2 595 274 bp · 58,5% GCBifidobacterium sp. MSTE12
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key