1 HisKA#1
184-249 aa · 66 aa · 14.5% of protein
Raw token
HisKA:184:0.00000000000153:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1494_RS01075
Histidine kinase, Classic
Bifidobacterium sp. MSTE12 · GCF_000513015
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000513015#HMPREF1494_RS01075Stable P2CS identifier used across views.
GenomeGCF_000513015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 456 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-427 aa · 112 aa · 24.6% of protein
Raw token
HATPase_c:316:7.03e-31:427:112:109- Raw architecture: HisKA:184:0.00000000000153:249:66:64#HATPase_c:316:7.03e-31:427:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000513015::NZ_AZYA01000007.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71056-73130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1494_0108RefSeq proteinWP_034518619.1
Context group ID
GCF_000513015::NZ_AZYA01000007.1::G00004Context members
HMPREF1494_RS01075HMPREF1494_RS01080
Partner locus tags
HMPREF1494_RS01075HMPREF1494_RS01080
Partner old locus tags
HMPREF1494_0108HMPREF1494_0109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034518619.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2R3H0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2R3H0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1494_RS01075Primary locus identifier stored in the genes table.
Old locus tagHMPREF1494_0108Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AZYA01000007.1Sequence record reported by the local genomic context database.
Genomic interval71 056-72 426 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 056-73 130 ntGCF_000513015::NZ_AZYA01000007.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000513015::NZ_AZYA01000007.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AZYA01000007.1All displayed genes belong to this local TCS context.
Neighborhood span71 056-73 130 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 056 nt73 130 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1494_RS01075GCF_000513015#HMPREF1494_RS01075
HKClassicCurrent focus
71 056-72 426 nt · Forward (+)
HMPREF1494_RS01080GCF_000513015#HMPREF1494_RS01080
RROmpR
72 426-73 130 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513015#HMPREF1494_RS01075The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1888332
Simplified PFAM architecture for HKOC_1888332
PFAM domain coverage: 177 / 456 aa (38.8%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_1888332
- Positioned domains: HisKA 184-249 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_000513015#HMPREF1494_RS01075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 409 · GCF_000513015
AssemblyBspMSTE12v1.0 · Contighaploid
Genome composition2 595 274 bp · 58,5% GCBifidobacterium sp. MSTE12
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key