1 HisKA#1
85-141 aa · 57 aa · 19.2% of protein
Raw token
HisKA:85:0.00000000000214:141:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS13145
Histidine kinase, Classic
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000507805#HMPREF1201_RS13145Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 297 aa (49.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-286 aa · 90 aa · 30.3% of protein
Raw token
HATPase_c:197:5.06e-20:286:95:109- Raw architecture: HisKA:85:0.00000000000214:141:57:64#HATPase_c:197:5.06e-20:286:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000507805::NZ_KI669417.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span260505-261398Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_02652RefSeq proteinWP_009244407.1
Context group ID
GCF_000507805::NZ_KI669417.1::G00041Context members
HMPREF1201_RS13145
Partner locus tags
HMPREF1201_RS13145
Partner old locus tags
HMPREF1201_02652
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244407.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NP81Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NP81_MEDG5Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS13145Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_02652Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669417.1Sequence record reported by the local genomic context database.
Genomic interval260 505-261 398 nt894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span260 505-261 398 ntGCF_000507805::NZ_KI669417.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669417.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669417.1All displayed genes belong to this local TCS context.
Neighborhood span260 505-261 398 nt894 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 505 nt261 398 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1201_RS13145GCF_000507805#HMPREF1201_RS13145
HKClassicCurrent focus
260 505-261 398 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS13145The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2889851
Simplified PFAM architecture for HKOC_2889851
PFAM domain coverage: 143 / 297 aa (48.1%)
1 aa297 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-143] | HATPase_c[197-282]
- Domain count: 2
- Matched identifier: HKOC_2889851
- Positioned domains: HisKA 87-143 ; HATPase_c 197-282
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS13145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key