1 HAMP#1
85-155 aa · 71 aa · 17.8% of protein
Raw token
HAMP:85:0.000000000882:155:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS01860
Histidine kinase, Classic
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassHKTypeClassicLength399 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507805#HMPREF1201_RS01860Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length399 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 399 aa (62.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa399 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 16.8% of protein
Raw token
HisKA:160:0.0000000000447:226:67:643 HATPase_c#3
280-392 aa · 113 aa · 28.3% of protein
Raw token
HATPase_c:280:1.15e-30:392:113:109- Raw architecture: HAMP:85:0.000000000882:155:71:69#HisKA:160:0.0000000000447:226:67:64#HATPase_c:280:1.15e-30:392:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507805::NZ_KI669414.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span355660-357596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_00375RefSeq proteinWP_023923650.1
Context group ID
GCF_000507805::NZ_KI669414.1::G00003Context members
HMPREF1201_RS01855HMPREF1201_RS01860
Partner locus tags
HMPREF1201_RS01855HMPREF1201_RS01860
Partner old locus tags
HMPREF1201_00374HMPREF1201_00375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923650.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NW44Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NW44_MEDG5Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS01860Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_00375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669414.1Sequence record reported by the local genomic context database.
Genomic interval356 397-357 596 nt1 200 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span355 660-357 596 ntGCF_000507805::NZ_KI669414.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669414.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669414.1All displayed genes belong to this local TCS context.
Neighborhood span355 660-357 596 nt1 937 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
355 660 nt357 596 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1201_RS01855GCF_000507805#HMPREF1201_RS01855
RROmpR
355 660-356 400 nt · Forward (+)
HMPREF1201_RS01860GCF_000507805#HMPREF1201_RS01860
HKClassicCurrent focus
356 397-357 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS01860The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2452066
Simplified PFAM architecture for HKOC_2452066
PFAM domain coverage: 173 / 399 aa (43.4%)
1 aa399 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-225] | HATPase_c[283-389]
- Domain count: 2
- Matched identifier: HKOC_2452066
- Positioned domains: HisKA 160-225 ; HATPase_c 283-389
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key