1 HisKA#1
655-720 aa · 66 aa · 7.5% of protein
Raw token
HisKA:655:0.000000000000264:720:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS05175
Histidine kinase, Classic
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassHKTypeClassicLength877 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507785#HMPREF1202_RS05175Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length877 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 877 aa (19.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa877 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
767-873 aa · 107 aa · 12.2% of protein
Raw token
HATPase_c:767:0.000000000308:873:114:109- Raw architecture: HisKA:655:0.000000000000264:720:66:64#HATPase_c:767:0.000000000308:873:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507785::NZ_KI669408.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span239611-242951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_01045RefSeq proteinWP_005611144.1
Context group ID
GCF_000507785::NZ_KI669408.1::G00012Context members
HMPREF1202_RS05170HMPREF1202_RS05175
Partner locus tags
HMPREF1202_RS05170HMPREF1202_RS05175
Partner old locus tags
HMPREF1202_01044HMPREF1202_01045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005611144.1Primary protein accession used for annex mappings.
UniProt accessionA0A414P1Z8Primary UniProt accession resolved in the annex database.
UniProt IDA0A414P1Z8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS05175Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_01045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669408.1Sequence record reported by the local genomic context database.
Genomic interval240 318-242 951 nt2 634 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span239 611-242 951 ntGCF_000507785::NZ_KI669408.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669408.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669408.1All displayed genes belong to this local TCS context.
Neighborhood span239 611-242 951 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
239 611 nt242 951 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1202_RS05170GCF_000507785#HMPREF1202_RS05170
RROmpR
239 611-240 306 nt · Forward (+)
HMPREF1202_RS05175GCF_000507785#HMPREF1202_RS05175
HKClassicCurrent focus
240 318-242 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS08165Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0451159
Simplified PFAM architecture for HKOC_0451159
PFAM domain coverage: 158 / 877 aa (18.0%)
1 aa877 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[655-720] | HATPase_c[767-858]
- Domain count: 2
- Matched identifier: HKOC_0451159
- Positioned domains: HisKA 655-720 ; HATPase_c 767-858
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS08165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key