1 HisKA#1
655-720 aa · 66 aa · 7.5% of protein
Raw token
HisKA:655:0.000000000000264:720:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMLAC_RS08165
Histidine kinase, Classic
[Ruminococcus] lactaris ATCC 29176 · GCF_000155205
ClassHKTypeClassicLength877 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000155205#RUMLAC_RS08165Stable P2CS identifier used across views.
GenomeGCF_000155205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length877 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 877 aa (19.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa877 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
767-873 aa · 107 aa · 12.2% of protein
Raw token
HATPase_c:767:0.000000000308:873:114:109- Raw architecture: HisKA:655:0.000000000000264:720:66:64#HATPase_c:767:0.000000000308:873:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000155205::NZ_DS990192.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122973-126313Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMLAC_01462RefSeq proteinWP_005611144.1
Context group ID
GCF_000155205::NZ_DS990192.1::G00011Context members
RUMLAC_RS08165RUMLAC_RS08170
Partner locus tags
RUMLAC_RS08165RUMLAC_RS08170
Partner old locus tags
RUMLAC_01462RUMLAC_01463
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005611144.1Primary protein accession used for annex mappings.
UniProt accessionA0A414P1Z8Primary UniProt accession resolved in the annex database.
UniProt IDA0A414P1Z8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMLAC_RS08165Primary locus identifier stored in the genes table.
Old locus tagRUMLAC_01462Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS990192.1Sequence record reported by the local genomic context database.
Genomic interval122 973-125 606 nt2 634 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 973-126 313 ntGCF_000155205::NZ_DS990192.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000155205::NZ_DS990192.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS990192.1All displayed genes belong to this local TCS context.
Neighborhood span122 973-126 313 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 973 nt126 313 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMLAC_RS08165GCF_000155205#RUMLAC_RS08165
HKClassicCurrent focus
122 973-125 606 nt · Reverse (-)
RUMLAC_RS08170GCF_000155205#RUMLAC_RS08170
RROmpR
125 618-126 313 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS08165The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0451159
Simplified PFAM architecture for HKOC_0451159
PFAM domain coverage: 158 / 877 aa (18.0%)
1 aa877 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[655-720] | HATPase_c[767-858]
- Domain count: 2
- Matched identifier: HKOC_0451159
- Positioned domains: HisKA 655-720 ; HATPase_c 767-858
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS08165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 471 875 · GCF_000155205
AssemblyASM15520v1 · Scaffoldhaploid
Genome composition2 731 235 bp · 42,5% GC[Ruminococcus] lactaris ATCC 29176
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key