1 dCache_1#1
92-282 aa · 191 aa · 31.3% of protein
Raw token
dCache_1:92:0.000000000185:282:197:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS01970
Histidine kinase, Classic
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507785#HMPREF1202_RS01970Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage379 / 611 aa (62.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-461 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:382:8.41e-34:461:80:803 HATPase_c#3
477-584 aa · 108 aa · 17.7% of protein
Raw token
HATPase_c:477:6.24e-18:584:111:109- Raw architecture: dCache_1:92:0.000000000185:282:197:195#His_kinase:382:8.41e-34:461:80:80#HATPase_c:477:6.24e-18:584:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507785::NZ_KI669407.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span415388-418955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_00397RefSeq proteinWP_044904927.1
Context group ID
GCF_000507785::NZ_KI669407.1::G00002Context members
HMPREF1202_RS01965HMPREF1202_RS01970
Partner locus tags
HMPREF1202_RS01965HMPREF1202_RS01970
Partner old locus tags
HMPREF1202_00396HMPREF1202_00397
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044904927.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS01970Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_00397Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669407.1Sequence record reported by the local genomic context database.
Genomic interval417 120-418 955 nt1 836 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span415 388-418 955 ntGCF_000507785::NZ_KI669407.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669407.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669407.1All displayed genes belong to this local TCS context.
Neighborhood span415 388-418 955 nt3 568 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
415 388 nt418 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1202_RS01965GCF_000507785#HMPREF1202_RS01965
RRunclassified
415 388-416 983 nt · Forward (+)
HMPREF1202_RS01970GCF_000507785#HMPREF1202_RS01970
HKClassicCurrent focus
417 120-418 955 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507785#HMPREF1202_RS01970The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1000957
Simplified PFAM architecture for HKOC_1000957
PFAM domain coverage: 425 / 611 aa (69.6%)
1 aa611 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[45-281] | His_kinase[383-461] | HATPase_c[477-585]
- Domain count: 3
- Matched identifier: HKOC_1000957
- Positioned domains: dCache_1 45-281 ; His_kinase 383-461 ; HATPase_c 477-585
Cluster members and taxonomy
Representative gene: GCF_000507785#HMPREF1202_RS01970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key