1 HAMP#1
198-265 aa · 68 aa · 13.2% of protein
Raw token
HAMP:198:0.00000000000000535:265:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0102105
Histidine kinase, Classic
Blautia wexlerae DSM 19850 · GCF_000484655
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0102105Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 514 aa (47.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
291-358 aa · 68 aa · 13.2% of protein
Raw token
HisKA:291:0.00000000000000128:358:68:643 HATPase_c#3
403-511 aa · 109 aa · 21.2% of protein
Raw token
HATPase_c:403:1.52e-19:511:110:109- Raw architecture: HAMP:198:0.00000000000000535:265:68:69#HisKA:291:0.00000000000000128:358:68:64#HATPase_c:403:1.52e-19:511:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000004.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18369-20590Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000004.1::G00005Context members
K316_RS0102105K316_RS0102110
Partner locus tags
K316_RS0102105K316_RS0102110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025577086.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0102105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000004.1Sequence record reported by the local genomic context database.
Genomic interval18 369-19 913 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 369-20 590 ntGCF_000484655::NZ_AXVN01000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span18 369-20 590 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 369 nt20 590 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0102105GCF_000484655#K316_RS0102105
HKClassicCurrent focus
18 369-19 913 nt · Reverse (-)
K316_RS0102110GCF_000484655#K316_RS0102110
RROmpR
19 910-20 590 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0102105The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411402
Simplified PFAM architecture for HKOC_1411402
PFAM domain coverage: 228 / 514 aa (44.4%)
1 aa514 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[215-265] | HisKA[291-358] | HATPase_c[404-512]
- Domain count: 3
- Matched identifier: HKOC_1411402
- Positioned domains: HAMP 215-265 ; HisKA 291-358 ; HATPase_c 404-512
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0102105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key